pkgmgr branch cleanup --local [--apply] [--json] [--merged-into REF] deletes local branches whose tip is an ancestor of the remote-tracking default or a --merged-into ref, each with update-ref against the planned sha. It keeps every branch git branch --delete-merged keeps: symbolic, checked out or registered in any worktree, under a rebase or bisect, deleteMerged=false in any worktree, system or global config, and the local upstream of any branch that stays. Git runs without inherited GIT_* variables except the ceiling; the keep reads run once with the caller's config variables and once with the default system and passwd-home config, so the environment can add keeps but never remove one. Repositories with symlinked refs, foreign worktree registrations or unreadable holds are refused with the plan still printed. MEDUSA: MEDUSA-OUTPUT-SQL-003 at branch_cmd.py:121 accepted after an independent review: the SQL comment+DELETE regex matched the help text --merged-into and the git key deleteMerged; no SQL in the change. 🎯 Fix: 92 % 💥 Break: 5 % 💸 Cost: 100 % ⏱️ Time: 100 % 🛡️ Security: 100 % 🏆 Score: 87 🚦 Gate: ✅ 90/5, cost and time <= 100, security 100 % Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>
Package Manager 🤖📦
Kevin's Package Manager (PKGMGR) is a multi-distro package manager and workflow orchestrator. It helps you develop, package, release and manage projects across multiple Linux-based operating systems (Arch, Debian, Ubuntu, Fedora, CentOS, …).
PKGMGR is implemented in Python and uses Nix (flakes) as a foundation for distribution-independent builds and tooling. On top of that it provides a rich CLI that proxies common developer tools (Git, Docker, Make, …) and glues them together into repeatable development workflows.
Why PKGMGR? 🧠
Traditional distro package managers like apt, pacman or dnf focus on a
single operating system. PKGMGR instead focuses on your repositories and
development lifecycle. It provides one configuration for all repositories,
one unified CLI to interact with them, and a Nix-based foundation that keeps
tooling reproducible across distributions.
Native package managers are still used where they make sense. PKGMGR coordinates the surrounding development, build and release workflows in a consistent way.
In addition, PKGMGR provides Docker images that can serve as a reproducible system baseline. These images bundle the complete PKGMGR toolchain and are designed to be reused as a stable execution environment across machines, pipelines and teams. This approach is specifically used within Infinito.Nexus to make complex systems distribution-independent while remaining fully reproducible.
Features 🚀
PKGMGR enables multi-distro development and packaging by managing multiple repositories from a single configuration file. It drives complete release pipelines across Linux distributions using Nix flakes, Python build metadata, native OS packages such as Arch, Debian and RPM formats, and additional ecosystem integrations like Ansible.
All functionality is exposed through a unified pkgmgr command-line interface
that works identically on every supported distribution. It combines repository
management, Git operations, Docker and Compose orchestration, as well as
versioning, release and changelog workflows. Many commands support a preview
mode, allowing you to inspect the underlying actions before they are executed.
Full development workflows
PKGMGR is not just a helper around Git commands. Combined with its release and versioning features it can drive end-to-end workflows:
- Clone and mirror repositories.
- Run tests and builds through
makeor Nix. - Bump versions, update changelogs and tags.
- Build distro-specific packages.
- Keep all mirrors and working copies in sync.
Worktrees and garbage collection
| Command | Does |
|---|---|
pkgmgr worktree up <branch> [--base REF] [--path DIR] [--pull REF ...] [--push BRANCH ...] |
Checks the branch out under <directories.worktrees>/<host>/<owner>/<repo>/<branch> or at --path, assigns a free slot, records the merge flow and runs the pinned worktree-init hook |
pkgmgr worktree flow [PATH] [--json] |
Shows the merge flow of the worktree at PATH (default: .) |
pkgmgr worktree flow set [PATH] (--pull REF ... | --no-pull) (--push BRANCH ... | --no-push) [--json] |
Replaces both lists of the merge flow |
pkgmgr worktree flow clear [PATH] [--json] |
Removes the merge flow |
pkgmgr worktree cleanup [--apply] |
Removes clean worktrees whose commits are merged or pushed: pinned worktree-fini hook, compose stack, checkout; the branch stays |
pkgmgr branch cleanup [--apply] |
Removes merged branches that no worktree holds, locally and on the remotes |
pkgmgr branch cleanup --local [--apply] [--json] [--merged-into REF]... |
Deletes only local branches whose tip is an ancestor of the remote-tracking default or of a --merged-into REF, each with git update-ref --no-deref -d against the planned sha and then its branch.<name> section in the repository's own config file (git config --file <git common dir>/config; a section it cannot remove is noted on the done item), also when the branch has an upstream or remote copy. Every git call of --local runs without any inherited GIT_* variable but GIT_CEILING_DIRECTORIES, which only narrows repository discovery, so a directory below a ceiling is never resolved to the repository above it; only the config reads of deleteMerged and of the upstreams run twice, both with the system config: once with the caller's GIT_CONFIG_GLOBAL, GIT_CONFIG_SYSTEM, GIT_CONFIG_PARAMETERS and GIT_CONFIG_COUNT with its GIT_CONFIG_KEY_<n> and GIT_CONFIG_VALUE_<n>, once without any of them, without XDG_CONFIG_HOME and with HOME set to the passwd home, and a branch either read keeps stays, so the environment can add keeps but never remove one. A --merged-into REF must name exactly one branch or remote-tracking ref, as git rev-parse --symbolic-full-name resolves it, in every scanned repository git can read; X~0, X^0, X@{0}, a sha, a range or an unknown ref stops the run. The default comes from origin, or from the only remote when there is no origin: the ref refs/remotes/<remote>/HEAD, else main, else master resolves to, every symref step inside refs/remotes/<remote>/, so never a local branch or HEAD; without one, for example with several remotes and no origin, the repository is refused, also under --merged-into; so is one whose refs, packed-refs, reftable, logs or logs/refs is a symlink (git-new-workdir), one with a symlink anywhere below refs/, reftable/ or logs/refs/ (for example refs/heads/team linked to another clone's heads), one whose git dir is neither its git common dir nor directly under <common>/worktrees/ (a registration moved elsewhere), or one whose git output is not UTF-8. The repository is the one the current directory belongs to, also in a submodule or with a separate git dir; one whose main worktree belongs to another repository (core.worktree), whose git dir is neither its git common dir nor directly under <common>/worktrees/, or whose path is not UTF-8 is refused with exit 2. Skips a symbolic branch, every branch a symbolic ref anywhere under refs/ (also a tag or remote-tracking one) or under the main worktree's or any registration's refs/worktree/ points to, a branch that is itself a --merged-into target, a branch a worktree holds or that the HEAD of the main repository or of any worktrees/<id> registration names (also one git worktree list omits or whose id is no valid ref name, read through git --git-dir=<dir> symbolic-ref HEAD, so also under reftable), one a rebase or bisect in any worktree works on, one merged only by patch or PR, and, as git branch --delete-merged keeps them, one whose branch.<name>.deleteMerged is false in the config of any worktree (also its config.worktree or an includeIf "onbranch:..." file) or in the system config file, and the local upstream, as git's %(upstream) resolves it in any worktree, of any branch that stays, also of one that --branch or --exclude leaves out, each shown as kept with its reason; these holds are read through the git common dir, whichever worktree is scanned, and a registration, symbolic ref, HEAD or state file they cannot read refuses the repository; when a repository vanishes, moves or stops being readable, or its default or a --merged-into target stops resolving mid-run, its later items are skipped with that reason and the plan is still printed. A repository git or the filesystem fails on while planning (for example a dangling .git file under --all) is refused with that reason and the run goes on. The plan, refused repositories included, is printed (as JSON with --json), and the run exits 1 when an item failed, else 2 when a repository was refused, else 0. It stops with a message on stderr, no plan and exit 2 in exactly these cases: without --all, the current directory is not inside a git repository, its git dir is neither its git common dir nor directly under <common>/worktrees/, its main worktree belongs to another repository (core.worktree), or its path or git output is not UTF-8; --apply outside the host PID namespace; a --merged-into REF refused as above; a --branch that matches no item. Meant for working clones and their worktrees, not for a bare server repository. Not mirrored from git branch --delete-merged: git also keeps a branch whose push would update its own upstream; --local does not. Known residuals: a worktree, rebase or symbolic ref that starts holding a branch between its last re-check and its update-ref -d is not seen; a deleteMerged or upstream config change after the plan is not re-checked before the delete; an entry under <git common dir>/worktrees/ that is no git dir (for example an empty leftover) refuses the repository. Reads no forge token and never fetches, pushes, deletes a remote branch, runs docker or repository hooks, touches a worktree, compose stack, volume or image, or refreshes the branch tree file (rerun pkgmgr branch tree for that) |
pkgmgr branch tree [--format json|yaml] [--output FILE] |
Writes every managed repository's branches and worktrees with their cleanup state, without fetching |
pkgmgr gc [--all] [--apply] |
Both cleanups in one pass, for the current repository or every managed one |
pkgmgr gc --report [--all] [--root DIR] [--threshold-mb MB] [--docker] [--json] |
Read-only disk inventory: worktree sizes, changes a cleanup would keep, --root children, core dumps, docker usage, free space per filesystem |
pkgmgr worktree orphans --stale-days N --top N |
Lists merged and abandoned branches and worktrees with a proposal each |
A hook runs only when the worktree_hooks config pins its command under the
<provider>/<account>/<repository> of a repository managed in the pkgmgr
config, and only for that repository's directory; origin's URL, which the
repository's own config sets, never selects a pin. {path} and {slot} are
replaced; a
worktree-init or worktree-fini target in the repository's Makefile is
reported, never run, because an agent may have written it. The pinned program
must be an absolute path or a root-owned command on a PATH entry that root
owns and no group or other user can write, up to /, so a binary planted in a
user-writable directory such as a virtualenv never runs. The Nix store never
counts: it is group-writable, and any user can have the daemon build
root-owned content there, so pin an absolute path on Nix. A bare name runs as
the resolved file that was checked. Inside a user namespace other than the
initial one, root means the overflow uid, under which the real root's files
show there, as do those of every other unmapped owner. Outside such a
namespace a directory on a nosuid mount, where udisks2 and FUSE put user
mounts, never counts as root's. The hook runs with
stdin closed, only those PATH entries and a 30 minute timeout. Removal walks to
the worktree without following a symbolic link and skips a worktree path that
is not its own realpath. A pinned command that reads repository files, such as make or a
script in the repository, trusts the worktree's content, tracked or ignored.
Every cleanup is a dry run until --apply, and --json prints the plan for
other tools. The agent skills
wrap these commands; see AGENTS.md for the split.
Merge flow
Every worktree can carry a merge flow that scripts and skills read: pull
lists the refs merged into the branch, in order, before a gate, deploy or
merge; push lists the branches the branch is merged into, in order, when it
is finished, each then pushed by the operator. It lives in
pkgmgr/flow.yml inside the worktree's own git directory (.git of the main
worktree, <common>/worktrees/<id> of a linked one), so it is never committed
and goes with the worktree:
version: 1
branch: feature/x
pull:
- origin/main
- store-i18n
push:
- feature/iam-profile-rbac
- production
branch is the branch the flow was set on; another current branch shows as a
warning. worktree up records --pull and --push; without them pull is
the base the worktree came from and push that base's local branch
(origin/main gives main). flow set needs each list or
its --no-pull/--no-push, and writes atomically into a pkgmgr/ of mode
0700. Every entry must pass git check-ref-format --branch and must not start
with -; a remote-tracking name such as origin/main passes. An invalid name
exits 2 and writes nothing. A flow file that is a symbolic link, no regular
file, larger than 64 KiB or malformed reads as invalid, with empty lists and
a warning, and is never followed.
flow --json prints worktree and git_dir (absolute paths), branch (the
current branch, null when detached), flow_branch (the file's branch),
pull, push, source (file, none or invalid) and warnings; it
exits 0 also without a flow, 2 when PATH is not a git worktree. In
pkgmgr branch tree every item carries flow: {"pull", "push", "source"},
or null without a worktree or a flow; flow warnings join the repository's
warnings.
Architecture & Setup Map 🗺️
The following diagram gives a full overview of:
- PKGMGR’s package structure,
- the layered installers (OS, foundation, Python, Makefile),
- and the setup controller that decides which layer to use on a given system.
Diagram status: 12 December 2025
Always-up-to-date version: https://s.veen.world/pkgmgrmp
Installation ⚙️
PKGMGR can be installed using make.
The setup mode defines which runtime layers are prepared.
Download
git clone https://github.com/kevinveenbirkenbach/package-manager.git
cd package-manager
Dependency installation (optional)
System dependencies required before running any make commands are installed via:
scripts/installation/dependencies.sh
The script detects and normalizes the OS and installs the required system-level dependencies accordingly.
Install
git clone https://github.com/kevinveenbirkenbach/package-manager.git
cd package-manager
make install
Setup modes
| Command | Prepares | Use case |
|---|---|---|
| make setup | Python venv and Nix | Full development & CI |
| make setup-venv | Python venv only | Local user setup |
Full setup (venv + Nix)
make setup
Use this for CI, servers, containers and full development workflows.
Venv-only setup
make setup-venv
source ~/.venvs/pkgmgr/bin/activate
Use this if you want PKGMGR isolated without Nix integration.
Alles klar 🙂 Hier ist der RUN-Abschnitt ohne Gedankenstriche, klar nach Nix, Docker und venv getrennt:
Run PKGMGR 🧰
PKGMGR can be executed in different environments. All modes expose the same CLI and commands.
Run via Nix (no installation)
nix run github:kevinveenbirkenbach/package-manager#pkgmgr -- --help
Run via Docker 🐳
PKGMGR can be executed inside Docker containers for CI, testing and isolated workflows.
Container images
One image per distribution, each installing PKGMGR as a distro-native package
on top of the matching base image from
base-images. Every image
is a manifest list covering linux/amd64 and linux/arm64.
All images live under ghcr.io/kevinveenbirkenbach/:
| Tag | Contains |
|---|---|
pkgmgr-<distro>:latest |
newest build of the newest release on main |
pkgmgr-<distro>:stable |
newest build of the release the git tag stable marks |
pkgmgr-<distro>:<major> |
newest build of the newest release of that major |
pkgmgr-<distro>:<major>.<minor> |
newest build of the newest release of that minor |
pkgmgr-<distro>:<version> |
newest build of that release |
pkgmgr-<distro>:<version>.<unix-ts> |
one build, never moves |
<distro> is one of arch, debian, ubuntu, fedora, centos. The Arch
image is published without the suffix as well, so pkgmgr:stable and
pkgmgr-arch:stable are the same image.
<version> is the PKGMGR release and <unix-ts> the build time, so
2.3.0.1767225600 is a full version an updater can order and pin. Every tag of
one build points at the same image.
stable moves only once "Mark stable commit" has moved the git tag stable,
which it does after every test of that release passed. Every day at 03:00 UTC,
after the daily 00:00 UTC build of base-images, and on demand through the
workflow's manual trigger, two releases are rebuilt on the newest base image:
- the newest
vX.Y.Zrelease onmain, movinglatest, its prefixes and<version>, and adding<version>.<unix-ts>; - the release the git tag
stablemarks, when that is an older one, movingstableand<version>, adding its own<version>.<unix-ts>, and moving a prefix only while it is still the newest release of that prefix.
With newest 2.4.0 and stable 2.3.0, 2.4.0 takes latest, 2 and 2.4,
and 2.3.0 takes stable and 2.3. A security update in base-images thereby
reaches whoever pinned a major, a minor, a release or follows stable.
Each release is compared with its own published <version>. A rebuild whose
installed packages equal it pushes nothing, since a new timestamp tag would make
every pin bump for no change; a tag of that release that does not show the
published build yet, such as stable right after "Mark stable commit", is moved
without a new timestamp.
A rebuild runs the build scripts of the release it rebuilds, not those of
main, so the skip and the tag rules above only hold for releases tagged after
this scheme landed. The scripts of an earlier release know no aliases: its merge
step fails and leaves its tags where they are, until a newer release replaces
it as the newest and the stable one.
For a clean environment that carries the system dependencies but no PKGMGR,
pull base-<distro> from
base-images directly.
Run examples
docker run --rm -it \
-v "$PWD":/src \
-w /src \
ghcr.io/kevinveenbirkenbach/pkgmgr:stable \
pkgmgr --help
Run via virtual environment (venv)
After activating the venv:
pkgmgr --help
This allows you to choose between zero install execution using Nix, fully prebuilt Docker environments or local isolated venv setups with identical command behavior.
License 📄
This project is licensed under the MIT License. See the LICENSE file for details.
Author 👤
Kevin Veen-Birkenbach https://www.veen.world

